PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130500.2.p
Common NamePRUPE_ppa027182mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 385aa    MW: 43344.4 Da    PI: 6.5855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12309356355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G130500.2.p 309 STHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 356
                         68*************************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4022219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.19306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-13309360No hitNo description
Gene3DG3DSA:4.10.280.103.6E-17309368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17309372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-15312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEDIISPCSS PKFGQENSAT FHQRLQFIVQ NRPEWWAYSI FWQASKDNND DQVVLSWAGG  60
HFKSSRDFAS KRSNKMTNNY QPKFGFSSVE RKNVNNREVE VLFDEEDMVD LDTSLVDHGV  120
GDVTDSEWFY FYTVSLTQSF AAGHGNNSIL DRAFCSGGFV WLAGDHELQF YECERVKEAR  180
MHGIQTLVCV ATPCGVLELA SLDVIKEDWG LVHLSKSLFE SNNNRVSKQG SRDGNVLVSL  240
LENEMFSGGQ KDLTRQECCV KEATPVNIGG SSSDSPSDSV GNFTSANAKN IRLKKRGRSS  300
NHGTGRESST HVEAERQRRE KLNHRFYVLR SVVPNVSKMD RSSLLADAVA YINQLKEKVE  360
ELEAKIQAQP QNPKVGHVLL WKWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-26112222195Transcription factor MYC3
4rqw_B1e-26112222195Transcription factor MYC3
4rs9_A1e-26112222195Transcription factor MYC3
4yz6_A1e-26112222195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210924.10.0hypothetical protein PRUPE_ppa027182mg
TrEMBLM5WS220.0M5WS22_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.13e-99(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-44bHLH family protein